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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3694424_3695136_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3694424 - 3695136
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGTGTAGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
LPIVMKGILRADDAKEAVKL
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
70.5
41.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
37.7
-1.4
2.7
42.2
44.7
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
HAO1
Ensembl Gene ID:
ENSAPLG00000012530
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013058
3671655 - 3699086
27432