About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_36961556_36965949_R

Intron Information:

Intron Rank:
128938
Intron Class:
major
Intron Phase:
Intron Coordinates:
36961556 - 36965949
Intron Length:
4394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTCCAT
U12 Branch Point Sequence:
TGTTCCATTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.4
40.3
Major BPS
59.5
0.24
1.5
72.5
43.5
Major PPT
80.6
0.69
0.9
73.7
35.6
Minor 5ss
34.3
-1.8
2.8
40.4
45.5
Minor BPS
62.6
0.39
1.9
77.79
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016517
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039081
36961273 - 37010262
48990