About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3698627_3699015_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3698627 - 3699015
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CAATATGTAACT
Flanking Amino Acid:
EEFRLAMALTGCRSIEEISR
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
72.2
0.5
0.9
63.1
39
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
48
-0
2.2
66.7
43.8

Associated Gene:

Gene:
HAO1
Ensembl Gene ID:
ENSAPLG00000012530
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013058
3671655 - 3699086
27432