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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37067456_37067574_R

Intron Information:

Intron Rank:
137917
Intron Class:
major
Intron Phase:
Intron Coordinates:
37067456 - 37067574
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
GTAACTTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
80.5
33.7
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
81.6
0.71
0.6
81.5
23.6
Minor 5ss
41.9
-0.9
3.1
56.7
47.6
Minor BPS
47.7
-0.3
1.7
51.85
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019996
37067252 - 37068938
1687