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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37205360_37206286_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37205360 - 37206286
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATGT
Flanking Amino Acid:
GAVGSVLFRKGVVGDWKNLF
Intron Amino Acid Position:
1203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.5
0.71
0.9
72.8
41.9
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
67
0.61
1.9
87.39
38.7

Associated Gene:

Gene:
CEBPZ
Ensembl Gene ID:
ENSAPLG00000014239
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014873
37205229 - 37230533
25305