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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37207630_37208602_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37207630 - 37208602
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCTTT
5'SS Class:
major
3'SS Sequence:
TCTCCTACTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
TCACCTACAACT
Flanking Amino Acid:
PKSIFKNKAKILVLFRNPKD
Intron Amino Acid Position:
1077

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
74.8
38.1
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
78.9
0.65
0.8
70.2
35
Minor 5ss
42.9
-0.8
3.4
63.6
48.1
Minor BPS
48.7
-0
1.8
67.75
42.6

Associated Gene:

Gene:
CEBPZ
Ensembl Gene ID:
ENSAPLG00000014239
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014873
37205229 - 37230533
25305