About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37208693_37208942_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37208693 - 37208942
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTGTTTATTT
Flanking Amino Acid:
IECGDPDKYQRMKQIPSPRI
Intron Amino Acid Position:
1047

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1.1
78.8
30.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.8
0.63
1
79
33.3
Minor 5ss
28.4
-2.5
2.9
32.1
42.4
Minor BPS
53.6
0.19
2
74.81
43.2

Associated Gene:

Gene:
CEBPZ
Ensembl Gene ID:
ENSAPLG00000014239
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014873
37205229 - 37230533
25305