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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37214785_37215606_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37214785 - 37215606
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
AGTTTCTCACGT
Flanking Amino Acid:
LNAMANRDNADAKQIKWEVE
Intron Amino Acid Position:
969

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
85.3
0.8
0.7
79.6
25.9
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
46.8
-0.1
2.1
66.81
43.9

Associated Gene:

Gene:
CEBPZ
Ensembl Gene ID:
ENSAPLG00000014239
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014873
37205229 - 37230533
25305