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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37215689_37215773_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37215689 - 37215773
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TATTTCTTAATA
Flanking Amino Acid:
DANMLASAEEFGYLLDENAG
Intron Amino Acid Position:
942

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.8
1.13
0.8
81.8
38.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
77.2
0.61
1
78.1
34.2
Minor 5ss
33.5
-1.9
4
48.7
47.5
Minor BPS
82.5
1.02
0.9
84.13
29.2

Associated Gene:

Gene:
CEBPZ
Ensembl Gene ID:
ENSAPLG00000014239
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014873
37205229 - 37230533
25305