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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37215836_37216329_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37215836 - 37216329
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTGTCTCATAC
Flanking Amino Acid:
KEMNSVGSLEGSNRGKKRKL
Intron Amino Acid Position:
921

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
47.2
-0.2
1.9
63.32
42.2

Associated Gene:

Gene:
CEBPZ
Ensembl Gene ID:
ENSAPLG00000014239
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014873
37205229 - 37230533
25305