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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37217508_37218520_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37217508 - 37218520
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
CGTATTTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTTACGTATTT
Flanking Amino Acid:
DVSQDDLDFAGNIKKKNTGS
Intron Amino Acid Position:
822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69
41.8
Major BPS
74.2
0.6
1
67
39.4
Major PPT
79.1
0.65
0.8
77
37.1
Minor 5ss
34.2
-1.8
3.2
41.7
44.2
Minor BPS
49.9
0.07
2.4
80.67
41.5

Associated Gene:

Gene:
CEBPZ
Ensembl Gene ID:
ENSAPLG00000014239
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014873
37205229 - 37230533
25305