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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37218582_37219410_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37218582 - 37219410
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTTTCTTTGAAT
Flanking Amino Acid:
VDDDEFERALDAFEADDSAV
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
75.7
36.7
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
74.4
0.55
0.7
65.8
30.3
Minor 5ss
39.9
-1.1
3.3
47.1
48.3
Minor BPS
78
0.96
1.3
92.24
29.8

Associated Gene:

Gene:
CEBPZ
Ensembl Gene ID:
ENSAPLG00000014239
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014873
37205229 - 37230533
25305