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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37220689_37222358_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37220689 - 37222358
Intron Length:
1670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCAG
5'SS Class:
major
3'SS Sequence:
TTGGCCTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCAACTTGAAGT
Flanking Amino Acid:
QFMTDRRTLAVNSKEFLARD
Intron Amino Acid Position:
746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
61.7
44.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79.5
0.66
0.9
73.2
37.1
Minor 5ss
37.3
-1.4
3
47.3
48.1
Minor BPS
49.5
0.04
1.8
66.22
44.3

Associated Gene:

Gene:
CEBPZ
Ensembl Gene ID:
ENSAPLG00000014239
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014873
37205229 - 37230533
25305