About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37222428_37223070_R


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
37222428 - 37223070

Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAAACATT

5'SS Class:
strong_major

3'SS Sequence:
TGTTCTGCTACAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTGTAAT

U12 Branch Point Sequence:
TTGTAATGAAGT

Flanking Amino Acid:
YRNPKPNKGKENTSSVVMQR

Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
83.8
0.8
0.9
84.2
33.9

Major BPS
84.4
0.85
1.1
84
34.5

Major PPT
79.2
0.66
0.9
72.7
37.6

Minor 5ss
44.7
-0.6
3.1
66
45.2

Minor BPS
47.1
-0.1
2.1
71.29
44.9

Associated Gene:

Gene:
CEBPZ

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

37205229 - 37230533
25305