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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37238019_37238828_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37238019 - 37238828
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTTCTTAAACT
Flanking Amino Acid:
DKSLSHPWLQDYQTWLDLRE
Intron Amino Acid Position:
834

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
71.1
35.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.2
0.72
0.7
81.8
29.8
Minor 5ss
36.7
-1.5
3.1
47.8
47.6
Minor BPS
73.5
0.82
1.6
88.47
36.7

Associated Gene:

Gene:
PRKD3
Ensembl Gene ID:
ENSAPLG00000014444
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015127
37236845 - 37272728
35884