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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37238915_37239760_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37238915 - 37239760
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TCTTCTTTGACA
Flanking Amino Acid:
PNPWKEISSEAIDLINNLLQ
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82
0.72
0.9
79.4
32.6
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
79.5
0.92
1
81.99
33.2

Associated Gene:

Gene:
PRKD3
Ensembl Gene ID:
ENSAPLG00000014444
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015127
37236845 - 37272728
35884