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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37240029_37240157_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37240029 - 37240157
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
GATTTCTCAGTT
Flanking Amino Acid:
LLASAEPFPQVKLCDFGFAR
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
89.8
0.89
0.7
85
29
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
51.8
0.13
1.8
70.09
40.9

Associated Gene:

Gene:
PRKD3
Ensembl Gene ID:
ENSAPLG00000014444
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015127
37236845 - 37272728
35884