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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37244959_37247705_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37244959 - 37247705
Intron Length:
2747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCAGG
5'SS Class:
major
3'SS Sequence:
TCTTTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTTTCCTTATTT
Flanking Amino Acid:
CTAAGQGKDHKELSLSISVS
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
57.7
47
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.3
0.88
0.7
84.4
29
Minor 5ss
41
-1
2.9
54.4
43.6
Minor BPS
74.6
0.85
1.6
87.57
38.6

Associated Gene:

Gene:
PRKD3
Ensembl Gene ID:
ENSAPLG00000014444
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015127
37236845 - 37272728
35884