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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37252574_37254185_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37252574 - 37254185
Intron Length:
1612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTATCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTATTTTAATT
Flanking Amino Acid:
DKDEEAVKTISPSTSNNIPL
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.7
0.74
0.7
81.1
30.7
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
70.3
0.71
1.2
80.77
35.1

Associated Gene:

Gene:
PRKD3
Ensembl Gene ID:
ENSAPLG00000014444
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015127
37236845 - 37272728
35884