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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37254370_37256096_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37254370 - 37256096
Intron Length:
1727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTGCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TATATTTGAAAT
Flanking Amino Acid:
DCLGEVTFNGEPASPGQDLD
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
71.5
0.48
1
62.5
44.3
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
54
0.2
1.5
71.96
38.4

Associated Gene:

Gene:
PRKD3
Ensembl Gene ID:
ENSAPLG00000014444
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015127
37236845 - 37272728
35884