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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37256175_37258868_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37256175 - 37258868
Intron Length:
2694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GCTTATTTATCT
Flanking Amino Acid:
GLFRQGMQCKDCRFNCHKRC
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
35.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.1
0.74
0.7
81.9
28.4
Minor 5ss
39
-1.2
3.4
56.7
47.6
Minor BPS
56.3
0.27
1.8
73.39
43.5

Associated Gene:

Gene:
PRKD3
Ensembl Gene ID:
ENSAPLG00000014444
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015127
37236845 - 37272728
35884