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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37261937_37263618_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37261937 - 37263618
Intron Length:
1682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTTAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
AATTTTTTAAAA
Flanking Amino Acid:
EGDLVEVVLSALATVEDFQI
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
66.8
0.38
1.1
68.7
40.3
Minor 5ss
40.4
-1.1
3.2
56.3
42.5
Minor BPS
67.4
0.54
1.3
71.85
33.4

Associated Gene:

Gene:
PRKD3
Ensembl Gene ID:
ENSAPLG00000014444
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015127
37236845 - 37272728
35884