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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37263758_37271684_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37263758 - 37271684
Intron Length:
7927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CATGTGTTAATT
Flanking Amino Acid:
DLVCSIVYQKFPECGFFGMY
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.4
33.4
Major BPS
84.4
0.85
1
84
34.5
Major PPT
86.4
0.82
0.7
81.3
29
Minor 5ss
44.5
-0.6
3.2
63.6
48.1
Minor BPS
49.3
0.03
2.1
67.77
43.9

Associated Gene:

Gene:
PRKD3
Ensembl Gene ID:
ENSAPLG00000014444
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015127
37236845 - 37272728
35884