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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37280233_37284334_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37280233 - 37284334
Intron Length:
4102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGAGAA
U12 Branch Point Sequence:
AGTTAGAGAAAT
Flanking Amino Acid:
ESGAGWTLLKYSHQPRILNS
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.2
30.7
Major BPS
48.8
-0
1.1
44.7
38.7
Major PPT
80
0.68
0.7
75.1
27.1
Minor 5ss
36.9
-1.5
3.2
48.5
47.7
Minor BPS
38.7
-0.7
2.3
60.09
42.2

Associated Gene:

Gene:
QPCT
Ensembl Gene ID:
ENSAPLG00000014830
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015458
37279300 - 37293530
14231