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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37284482_37286702_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37284482 - 37286702
Intron Length:
2221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TAATTAATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
GSPGNYAVRQHIKHRLQRLQ
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.5
0.55
1
67.7
42.1
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
QPCT
Ensembl Gene ID:
ENSAPLG00000014830
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015458
37279300 - 37293530
14231