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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37291082_37293183_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37291082 - 37293183
Intron Length:
2102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGCA
5'SS Class:
major
3'SS Sequence:
ATTTTCCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTTCTTCAAAT
Flanking Amino Acid:
EDDHVPFLLRGVPVLHLIPS
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.6
36.2
Major BPS
77.3
0.68
1
81.5
27
Major PPT
78.8
0.65
0.8
73.7
30.7
Minor 5ss
29.6
-2.3
3.4
39.3
46
Minor BPS
71.8
0.76
1.6
89.71
34.2

Associated Gene:

Gene:
QPCT
Ensembl Gene ID:
ENSAPLG00000014830
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015458
37279300 - 37293530
14231