About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37298831_37300332_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37298831 - 37300332
Intron Length:
1502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TATCATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATCA
Flanking Amino Acid:
HFWTLGFGNLAGSVHVRIRR
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78
0.63
0.9
70
40.8
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
66.1
0.5
1.5
75.42
36.1

Associated Gene:

Gene:
SLC30A6
Ensembl Gene ID:
ENSAPLG00000014847
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015504
37298333 - 37311804
13472