About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37301443_37301723_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37301443 - 37301723
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAA
U12 Branch Point Sequence:
TTTTTCTGTATT
Flanking Amino Acid:
LCITYMLIEINNYYAVDTAS
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
82.5
29.7
Major BPS
60.9
0.27
1
51.6
35
Major PPT
84.4
0.77
0.7
77.7
31.1
Minor 5ss
47.1
-0.3
2.5
59.7
39.1
Minor BPS
62.2
0.46
1.8
84.17
36.4

Associated Gene:

Gene:
SLC30A6
Ensembl Gene ID:
ENSAPLG00000014847
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015504
37298333 - 37311804
13472