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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37303668_37304779_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37303668 - 37304779
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGAAAT
5'SS Class:
major
3'SS Sequence:
TTTTCCTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
TTTTCTTTTCCT
Flanking Amino Acid:
ERFLEQPEIHTGRLLVGTFV
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.3
80.7
33.7
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
80.6
0.69
0.7
74.2
31
Minor 5ss
36.5
-1.5
3.1
48.8
40.5
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
SLC30A6
Ensembl Gene ID:
ENSAPLG00000014847
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015504
37298333 - 37311804
13472