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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37304816_37305625_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37304816 - 37305625
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GCATTTTCAATT
Flanking Amino Acid:
QLGALFILKESAERFLEQPE
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.3
0.73
0.8
77.7
36
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
53.5
0.19
1.5
64.96
40.2

Associated Gene:

Gene:
SLC30A6
Ensembl Gene ID:
ENSAPLG00000014847
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015504
37298333 - 37311804
13472