About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37305707_37306155_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37305707 - 37306155
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTAAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTCTAAACT
Flanking Amino Acid:
MKKPSPAYSFGFERFEVLAV
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
78.7
0.65
0.9
74.9
38.5
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
73
0.8
1.6
88.23
36.9

Associated Gene:

Gene:
SLC30A6
Ensembl Gene ID:
ENSAPLG00000014847
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015504
37298333 - 37311804
13472