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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37308925_37309856_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37308925 - 37309856
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
LMWCSSTNSIALTAYTYLTI
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
73.2
37.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
31.6
-2.1
3.4
43.4
44.3
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
SLC30A6
Ensembl Gene ID:
ENSAPLG00000014847
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015504
37298333 - 37311804
13472