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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37310871_37311801_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37310871 - 37311801
Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTATACTTCATT
Flanking Amino Acid:
MGTIHLFRKSQ
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
59.3
40.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.4
0.73
1
87.4
29.7
Minor 5ss
31.4
-2.1
3.3
37.8
42.4
Minor BPS
61.1
0.43
1.9
81.85
39.7

Associated Gene:

Gene:
SLC30A6
Ensembl Gene ID:
ENSAPLG00000014847
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015504
37298333 - 37311804
13472