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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37319743_37320564_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37319743 - 37320564
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
AKDAALGPIRELKPEQVKNM
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
78.8
38.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
39.6
-1.2
2.8
49.7
46.6
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
SPAST
Ensembl Gene ID:
ENSAPLG00000015351
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016105
37318512 - 37350876
32365