Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37320636_37324031_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37320636 - 37324031

Intron Length:

3396

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTTTACAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTCCTTACTC

Flanking Amino Acid:

LTQKELAQLARMTDGYSGSD

Intron Amino Acid Position:

539

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.06

0.7

93.7

19.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.34

1.1

66.8

37.6

Minor 5ss

39.4

-1.2

3.1

57.6

46.6

Minor BPS

0.86

1.5

86.11

32.2

Associated Gene:

Gene:

SPAST

Ensembl Gene ID:

ENSAPLG00000015351

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016105

37318512 - 37350876

32365