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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37324815_37325614_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37324815 - 37325614
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAAAA
5'SS Class:
major
3'SS Sequence:
TGTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATAT
Flanking Amino Acid:
RPQELDDAVLRRFTKRVYVS
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.2
69.6
36.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83
0.74
0.8
77.1
37.1
Minor 5ss
44.4
-0.6
2.7
57.4
46.9
Minor BPS
52.2
0.15
1.9
74
42.8

Associated Gene:

Gene:
SPAST
Ensembl Gene ID:
ENSAPLG00000015351
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016105
37318512 - 37350876
32365