Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37325695_37326406_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37325695 - 37326406

Intron Length:

712

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGC|GTAAGTATC

5'SS Class:

major

3'SS Sequence:

CTGCGTTATGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAC

U12 Branch Point Sequence:

GTTAACTGAAAG

Flanking Amino Acid:

KTEFLIEFDGVQSSGEDRIL

Intron Amino Acid Position:

472

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.3

76.2

39.9

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

0.38

61.9

Minor 5ss

41.2

-1

2.8

50.4

39.3

Minor BPS

48.1

-0.2

1.8

57.04

43.2

Associated Gene:

Gene:

SPAST

Ensembl Gene ID:

ENSAPLG00000015351

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016105

37318512 - 37350876

32365