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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37326499_37327063_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37326499 - 37327063
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
TAAGGTGTATTT
Flanking Amino Acid:
RELQPSIIFIDEVDSLLCER
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
88.8
0.87
0.7
88.9
28.2
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
37.2
-0.8
2.3
52.84
43.1

Associated Gene:

Gene:
SPAST
Ensembl Gene ID:
ENSAPLG00000015351
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016105
37318512 - 37350876
32365