About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37327723_37328877_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37327723 - 37328877
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTGTTTTAAAA
Flanking Amino Acid:
GPPGNGKTMLAKAVAAESNA
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.8
29.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.3
0.7
0.8
81
31
Minor 5ss
27.5
-2.6
2.7
28.2
37.3
Minor BPS
59.4
0.29
1.5
67.32
39.7

Associated Gene:

Gene:
SPAST
Ensembl Gene ID:
ENSAPLG00000015351
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016105
37318512 - 37350876
32365