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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37333814_37340709_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37333814 - 37340709
Intron Length:
6896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTTCTTTATAG
Flanking Amino Acid:
LACRNGHLQSESGAVPKKKD
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
85.5
0.8
0.7
80.6
31.5
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
64
0.3
1.8
72.46
40.4

Associated Gene:

Gene:
SPAST
Ensembl Gene ID:
ENSAPLG00000015351
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016105
37318512 - 37350876
32365