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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37345893_37347204_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37345893 - 37347204
Intron Length:
1312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTGTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTGTTTTAACA
Flanking Amino Acid:
KGIAVLVVGQGDQCERARRL
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.4
0.57
1.1
83.1
32.3
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
69.8
0.62
1.3
75.16
36.6

Associated Gene:

Gene:
SPAST
Ensembl Gene ID:
ENSAPLG00000015351
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016105
37318512 - 37350876
32365