About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37347292_37350461_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37347292 - 37350461
Intron Length:
3170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTCCTTTTTAAG
Flanking Amino Acid:
LALRIDEDERAGQKEQAVEW
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
78
0.63
1
82.4
26.6
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
46.6
-0.4
1.8
53.08
41.7

Associated Gene:

Gene:
SPAST
Ensembl Gene ID:
ENSAPLG00000015351
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016105
37318512 - 37350876
32365