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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37374260_37374403_R

Intron Information:

Intron Rank:
147117
Intron Class:
major
Intron Phase:
Intron Coordinates:
37374260 - 37374403
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
TTATGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTATTCTCACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72
39.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
85
0.79
0.9
77.1
41.8
Minor 5ss
38.1
-1.3
3.1
55.9
42.3
Minor BPS
49
-0
1.8
60.76
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035596
37372717 - 37374536
1820