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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37382257_37384169_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37382257 - 37384169
Intron Length:
1913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TATTGATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
AACGCATTAAAT
Flanking Amino Acid:
TKRPARAIIAPHAGYTYCGS
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.3
70.1
43.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
80.7
0.69
0.9
74
40.3
Minor 5ss
45.7
-0.5
2.8
62.9
41.8
Minor BPS
50.3
0.09
1.8
66.26
43.7

Associated Gene:

Gene:
MEMO1
Ensembl Gene ID:
ENSAPLG00000005693
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017359
37379156 - 37397023
17868