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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37462652_37465369_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37462652 - 37465369
Intron Length:
2718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATTTCTCATTT
Flanking Amino Acid:
DWCTDIRFTSGLLLFLLGMG
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.6
29.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.1
0.7
0.7
81
24.2
Minor 5ss
36.1
-1.6
2.6
44
43
Minor BPS
50.3
0.09
1.8
68.67
42.7

Associated Gene:

Gene:
SRD5A2
Ensembl Gene ID:
ENSAPLG00000025223
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022782
37440826 - 37467999
27174