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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37465472_37466390_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37465472 - 37466390
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTCTTTTGATG
Flanking Amino Acid:
PGEVTYKIPQGGLFTYVSGA
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.1
0.7
0.9
77
36.2
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
56.5
0.06
1.3
59.68
36.4

Associated Gene:

Gene:
SRD5A2
Ensembl Gene ID:
ENSAPLG00000025223
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022782
37440826 - 37467999
27174