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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37506849_37507405_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37506849 - 37507405
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTGT
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAATAT
U12 Branch Point Sequence:
TTGTCTTTTACA
Flanking Amino Acid:
HVDREDSINEVISPDTSVSI
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
72.6
39.2
Major BPS
58.7
0.22
1.1
55.4
40
Major PPT
88.6
0.87
0.7
83.7
31.3
Minor 5ss
44.4
-0.6
2.5
59.5
44.9
Minor BPS
70.7
0.64
1.6
78.96
37.6

Associated Gene:

Gene:
AHCTF1
Ensembl Gene ID:
ENSAPLG00000005120
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005355
37488090 - 37533169
45080