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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37507539_37507626_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37507539 - 37507626
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATTTT
5'SS Class:
major
3'SS Sequence:
TGCTTCCTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GCTTCCTTAAAG
Flanking Amino Acid:
WYHAQMPDSLRPEEFLYNCP
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
81.2
33.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
71.2
0.48
1
71
33.8
Minor 5ss
44.1
-0.6
3.3
66.4
45.1
Minor BPS
71.5
0.54
1.5
69.63
43.2

Associated Gene:

Gene:
AHCTF1
Ensembl Gene ID:
ENSAPLG00000005120
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005355
37488090 - 37533169
45080