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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37507809_37508272_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37507809 - 37508272
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGAATTTTAACA
Flanking Amino Acid:
QFFNPSTYNFDGTCLLNSGV
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
40.4
-1.1
3.2
56.3
42.5
Minor BPS
61.4
0.35
1.3
63.89
35.8

Associated Gene:

Gene:
AHCTF1
Ensembl Gene ID:
ENSAPLG00000005120
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005355
37488090 - 37533169
45080