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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_37508335_37509249_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37508335 - 37509249
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATCTTT
5'SS Class:
major
3'SS Sequence:
ATTGATGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TAATCTGTAATT
Flanking Amino Acid:
HMTCTGFQKETLNFLKKSGP
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
76.8
34.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.4
0.55
1
70
45
Minor 5ss
44.4
-0.6
3.1
64.6
46.7
Minor BPS
59.9
0.39
2
77.68
39.1

Associated Gene:

Gene:
AHCTF1
Ensembl Gene ID:
ENSAPLG00000005120
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005355
37488090 - 37533169
45080